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  5. XM_003061489.1

XM_003061489.1 (MicpuC2_49693, 49693)


Aliases : MicpuC2_49693, 49693

Description : Ribosomal protein S19e [Interproscan].


Gene families : OG_01_0003297 (OrthoFinder) Phylogenetic Tree(s): OG0003297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061489.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021017.6 tig00021017_g17179.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder
Cre02.g106600 30784812, RPS19 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz11g12080.t1 No alias Ribosomal protein S19e [Interproscan]. 0.11 OrthoFinder
EOD40848 No alias Ribosomal protein S19e [Interproscan]. 0.08 OrthoFinder
OT_11G02460.1 No alias Ribosomal protein S19e [Interproscan]. 0.12 OrthoFinder
PTI_13G03570.1 No alias Ribosomal protein S19e [Interproscan]. 0.16 OrthoFinder
Sro345_g122470.1 Contig2266.g18806 40S ribosomal protein S19 0.2 OrthoFinder
SymbC1.scaffold2373.2 2373.2 Ribosomal protein S19e [Interproscan]. 0.01 OrthoFinder
TP05G07890.1 No alias Ribosomal protein S19e [Interproscan]. 0.16 OrthoFinder
Vocar.0006s0096.1 32894126 Ribosomal protein S19e [Interproscan]. 0.06 OrthoFinder
XM_002509176.1 MICPUN_107171, 107171 Ribosomal protein S19e [Interproscan]. 0.15 OrthoFinder
lcl|BLLF01000010.1_cds_GFH05838.1_315 HaLaN_00368, GFH05838 Ribosomal protein S19e [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000010.1_cds_GFH05839.1_316 HaLaN_00369, GFH05839 40S ribosomal protein S19 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59438.1_7304 PRW59438 40S ribosomal S19-1 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494467.1_2997 KAA8494467 40S ribosomal protein S19-1 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004408 holocytochrome-c synthase activity IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 7 140
No external refs found!