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  5. XM_003061053.1

XM_003061053.1 (MicpuC2_48008, 48008)


Aliases : MicpuC2_48008, 48008

Description : Ribosomal protein L4/L1e [Interproscan].


Gene families : OG_01_0001152 (OrthoFinder) Phylogenetic Tree(s): OG0001152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003061053.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.35 tig00001003_g6290.t1 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.03 OrthoFinder
Cre11.g479500 30775927, PRPL4 Protein biosynthesis.organelle translation... 0.1 OrthoFinder
Cre12.g520400 30792302, MRPL4 No description available 0.04 OrthoFinder
Cz03g02040.t1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.07 OrthoFinder
EOD32718 No alias Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
OT_11G01720.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
OT_16G00330.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.1 OrthoFinder
PTI_07G00540.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Sro279_g106690.1 Contig3140.g24908 Protein L4 0.05 OrthoFinder
Sro51_chlor_g029480.1 Rpl4 Rpl4 0.05 OrthoFinder
TPCG02350.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
Transcript_contig_54114 54114 Ribosomal protein L4/L1e [Interproscan]. 0.01 OrthoFinder
Vocar.0037s0117.1 32897491 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Vocar.0048s0048.1 32893676 Ribosomal protein L4/L1e [Interproscan]. 0.05 OrthoFinder
XM_002503039.1 MICPUN_59033, 59033 Ribosomal protein L4/L1e [Interproscan]. 0.1 OrthoFinder
XM_002509236.1 MICPUN_76320, 76320 Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001390.1_cds_GFH19003.1_13480 HaLaN_15888, GFH19003 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45732.1_1468 PRW45732 50S ribosomal L4 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004506 squalene monooxygenase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043486 histone exchange IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 60 244
No external refs found!