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  5. XM_003060906.1

XM_003060906.1 (MicpuC2_28307, 28307)


Aliases : MicpuC2_28307, 28307

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002731 (OrthoFinder) Phylogenetic Tree(s): OG0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003060906.1
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.6 tig00000169_g11878.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre06.g278222 30778664, RCK1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cz04g00190.t1 No alias WD40 repeat [Interproscan]. 0.09 OrthoFinder
Dusal.0241s00008.1 33190252 WD40 repeat [Interproscan]. 0.1 OrthoFinder
EOD05714 No alias Receptor of activated protein kinase C [Ensembl]. 0.04 OrthoFinder
EOD14372 No alias Receptor of activated protein kinase C [Ensembl]. 0.04 OrthoFinder
OT_13G01530.1 No alias WD40 repeat [Interproscan]. 0.1 OrthoFinder
PTI_13G02390.1 No alias WD40 repeat [Interproscan]. 0.11 OrthoFinder
Sro925_g220910.1 Contig3078.g24550 Nucleotide-binding protein subunit beta-like protein 0.14 OrthoFinder
TP01G03160.1 No alias WD40 repeat [Interproscan]. 0.06 OrthoFinder
Vocar.0002s0308.1 32890609 WD40 repeat [Interproscan]. 0.03 OrthoFinder
XM_002502789.1 MICPUN_94482, 94482 WD40 repeat [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499471.1_8424 KAA8499471 Guanine nucleotide-binding protein subunit beta-2-like 1 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 8 43
IPR001680 WD40_repeat 96 133
IPR001680 WD40_repeat 145 179
IPR001680 WD40_repeat 230 261
IPR001680 WD40_repeat 187 221
IPR001680 WD40_repeat 54 91
IPR001680 WD40_repeat 288 311
No external refs found!