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  5. XM_003060262.1

XM_003060262.1 (MicpuC2_19397, 19397)


Aliases : MicpuC2_19397, 19397

Description : Pumilio RNA-binding repeat [Interproscan].


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003060262.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cz02g31140.t1 No alias Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold4817.1 4817.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold7049.3 7049.3 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_54127 54127 Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0007s0141.1 32887963 Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39206.1_2591 PRW39206 ARM repeat-containing 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495016.1_3546 KAA8495016 Pumilio domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 122 154
IPR001313 Pumilio_RNA-bd_rpt 197 216
IPR001313 Pumilio_RNA-bd_rpt 46 76
IPR001313 Pumilio_RNA-bd_rpt 163 188
No external refs found!