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  5. XM_003059440.1

XM_003059440.1 (MicpuC2_27251, 27251)


Aliases : MicpuC2_27251, 27251

Description : Ribosomal protein L13 [Interproscan].


Gene families : OG_01_0000958 (OrthoFinder) Phylogenetic Tree(s): OG0000958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003059440.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020538.65 tig00020538_g10372.t1 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea 0.02 OrthoFinder
Cpa|evm.model.tig00020912.24 tig00020912_g15798.t1 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre06.g264350 30779581, PRPL13 Protein biosynthesis.organelle translation... 0.1 OrthoFinder
Cre09.g405200 30781496, MRPL13 Protein biosynthesis.organelle translation... 0.05 OrthoFinder
Cz11g15150.t1 No alias Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
OT_06G01030.1 No alias Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
Sro874_g214140.1 Contig589.g7365 Protein L13 0.04 OrthoFinder
Vocar.0002s0545.1 32890832 Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
XM_002501391.1 MICPUN_97280, 97280 Ribosomal protein L13 [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20835.1_5043 PRW20835 50S ribosomal chloroplastic 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006497 protein lipidation IEP Enrichment
BP GO:0006505 GPI anchor metabolic process IEP Enrichment
BP GO:0006506 GPI anchor biosynthetic process IEP Enrichment
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 92 215
No external refs found!