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  5. XM_003059387.1

XM_003059387.1 (MicpuC2_33829, 33829)


Aliases : MicpuC2_33829, 33829

Description : AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003059387.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cz02g33220.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.04 OrthoFinder
OT_01G00660.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.05 OrthoFinder
OT_02G03140.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
OT_17G01910.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.04 OrthoFinder
Sro1272_g258180.1 Contig3783.g29035 Spermatogenesis-associated protein 5-like protein 1 0.02 OrthoFinder
Sro1493_g277320.1 Contig1998.g17101 Metalloprotease FTSH 0.02 OrthoFinder
XM_002500797.1 MICPUN_79795, 79795 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57417.1_8902 PRW57417 Ribosome biogenesis ATPase RIX7 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 50 181
IPR003959 ATPase_AAA_core 360 490
IPR041569 AAA_lid_3 206 247
IPR041569 AAA_lid_3 514 553
No external refs found!