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  5. XM_003058844.1

XM_003058844.1 (MicpuC2_44314, 44314)


Aliases : MicpuC2_44314, 44314

Description : rRNA-processing arch domain; ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003058844.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cre01.g027150 30789072 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.0199s00002.1 33199095 ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH... 0.02 OrthoFinder
EOD25937 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.02 OrthoFinder
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.01 OrthoFinder
SymbC1.scaffold1101.8 1101.8 rRNA-processing arch domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
Vocar.0001s0944.1 32886100 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.03 OrthoFinder
Vocar.0063s0039.1 32883464 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 768 938
IPR011545 DEAD/DEAH_box_helicase_dom 29 173
IPR025696 rRNA_proc-arch_dom 481 741
No external refs found!