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  5. XM_003057672.1

XM_003057672.1 (MicpuC2_15736, 15736)


Aliases : MicpuC2_15736, 15736

Description : SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].


Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003057672.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020562.25 tig00020562_g11151.t1 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder
Cre03.g179860 30786956 RNA processing.RNA modification.rRNA/tRNA... 0.09 OrthoFinder
Cz01g45120.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz01g45130.t1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
Dusal.0039s00007.1 33186951 Hypothetical protein 0.02 OrthoFinder
EOD09582 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
OT_13G01820.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.07 OrthoFinder
OT_14G02290.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.03 OrthoFinder
PTI_16G01630.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.08 OrthoFinder
TP03G01810.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57256 57256 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.05 OrthoFinder
Transcript_contig_59270 59270 Hypothetical protein 0.02 OrthoFinder
Vocar.0015s0322.1 32898844 SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.04 OrthoFinder
XM_002503226.1 MICPUN_59410, 59410 SAM-dependent methyltransferase RsmB/NOP2-type; CCT... 0.14 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32836.1_3709 PRW32836 TRNA (cytosine(34)-C(5))-methyltransferase 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 208 466
No external refs found!