XM_003057530.1 (MicpuC2_32742, 32742)


Aliases : MicpuC2_32742, 32742

Description : Replication protein A, OB domain; Replication factor-A protein 1, N-terminal; Replication factor A, C-terminal; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003057530.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
EOD40586 No alias Replication factor-A protein 1, N-terminal; Replication... 0.01 OrthoFinder
OT_15G01170.1 No alias Replication factor-A protein 1, N-terminal; Zinc finger,... 0.03 OrthoFinder
Sro944_g222890.1 Contig4161.g31781 Replication protein A 70 kDa DNA-binding subunit 0.03 OrthoFinder
Vocar.0032s0065.1 32893746 Replication factor A, C-terminal; Domain of unknown... 0.02 OrthoFinder
XM_002501913.1 MICPUN_105511, 105511 Replication protein A, OB domain; Zinc finger,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0005200 structural constituent of cytoskeleton IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
CC GO:0071821 FANCM-MHF complex IEP Enrichment
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 6 105
IPR013955 Rep_factor-A_C 514 667
IPR031657 REPA_OB_2 350 454
IPR001878 Znf_CCHC 735 752
IPR001878 Znf_CCHC 774 789
No external refs found!