XM_003057530.1 (MicpuC2_32742, 32742)

Aliases : MicpuC2_32742, 32742

Description : Replication protein A, OB domain; Replication factor-A protein 1, N-terminal; Replication factor A, C-terminal; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003057530.1
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
EOD40586	No alias	Replication factor-A protein 1, N-terminal; Replication...	0.01	OrthoFinder
OT_15G01170.1	No alias	Replication factor-A protein 1, N-terminal; Zinc finger,...	0.03	OrthoFinder
Sro944_g222890.1	Contig4161.g31781	Replication protein A 70 kDa DNA-binding subunit	0.03	OrthoFinder
Vocar.0032s0065.1	32893746	Replication factor A, C-terminal; Domain of unknown...	0.02	OrthoFinder
XM_002501913.1	MICPUN_105511, 105511	Replication protein A, OB domain; Zinc finger,...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Enrichment
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0007010	cytoskeleton organization	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0034061	DNA polymerase activity	IEP	Enrichment
CC	GO:0071821	FANCM-MHF complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007199	Rep_factor-A_N	6	105
IPR013955	Rep_factor-A_C	514	667
IPR031657	REPA_OB_2	350	454
IPR001878	Znf_CCHC	735	752
IPR001878	Znf_CCHC	774	789

External Links

No external refs found!

XM_003057530.1 (MicpuC2_32742, 32742)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation