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  5. XM_003057414.1

XM_003057414.1 (MicpuC2_15544, 15544)


Aliases : MicpuC2_15544, 15544

Description : ATP-binding cassette superfamily


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003057414.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cz11g18090.t1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Dusal.0407s00010.1 33197898 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
EOD03726 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
EOD06774 No alias Putative ABC transporter [Ensembl]. 0.01 OrthoFinder
EOD22725 No alias Putative ABC transporter [Ensembl]. 0.01 OrthoFinder
EOD33358 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
OT_07G03200.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
PTI_00G03030.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
Sro1769_g296490.1 Contig4211.g32039 Cyclolysin secretion/processing ATP-binding protein CyaB 0.02 OrthoFinder
Sro83_g044320.1 Contig4450.g33406 Lactococcin transport/processing ATP-binding protein LcnC-like 0.02 OrthoFinder
SymbC1.scaffold3653.4 3653.4 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Vocar.0023s0168.1 32883330 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0032s0010.1 32893720 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 50 319
IPR003439 ABC_transporter-like_ATP-bd 388 538
No external refs found!