XM_003056881.1 (MicpuC2_56534, 56534)

Aliases : MicpuC2_56534, 56534

Description : DEAD/DEAH box RNA helicase

Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003056881.1
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
Cre17.g727700	30782559	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.02	OrthoFinder
OT_04G02790.1	No alias	Helicase, C-terminal; GUCT; DEAD/DEAH box helicase...	0.02	OrthoFinder
OT_05G02140.1	No alias	Helicase, C-terminal; GUCT; DEAD/DEAH box helicase...	0.02	OrthoFinder
XM_002507844.1	MICPUN_97749, 97749	Helicase, C-terminal; DEAD/DEAH box helicase domain;...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0008094	ATPase, acting on DNA	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
MF	GO:0005506	iron ion binding	IEP	Enrichment
CC	GO:0005667	transcription regulator complex	IEP	Enrichment
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Enrichment
MF	GO:0015297	antiporter activity	IEP	Enrichment
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Enrichment
MF	GO:0020037	heme binding	IEP	Enrichment
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012562	GUCT	578	670
IPR011545	DEAD/DEAH_box_helicase_dom	168	337
IPR001650	Helicase_C	378	482

External Links

No external refs found!