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  5. XM_003056811.1

XM_003056811.1 (MicpuC2_56357, 56357)


Aliases : MicpuC2_56357, 56357

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001185 (OrthoFinder) Phylogenetic Tree(s): OG0001185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003056811.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre10.g436650 30789761 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.03 OrthoFinder
Dusal.0045s00001.1 33191641 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_10G03270.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
PTI_20G02340.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro1441_g272930.1 Contig2512.g20550 Dependent RNA helicase 0.03 OrthoFinder
TP04G05770.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0001s0986.1 32885925 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002503395.1 MICPUN_59763, 59763 Helicase, C-terminal; K Homology domain, type 1;... 0.06 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18294.1_5877 PRW18294 DEAD-box ATP-dependent RNA helicase 50 0.02 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05784.1_6102 PRW05784 DEAD-box ATP-dependent RNA helicase 39 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 118 297
IPR001650 Helicase_C 334 454
No external refs found!