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  5. XM_003056188.1

XM_003056188.1 (MicpuC2_2498, 2498)


Aliases : MicpuC2_2498, 2498

Description : Ribosomal RNA small subunit methyltransferase F, N-terminal; SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].


Gene families : OG_01_0002458 (OrthoFinder) Phylogenetic Tree(s): OG0002458_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003056188.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre06.g273413 30779691 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cz03g03120.t1 No alias Ribosomal RNA small subunit methyltransferase F,... 0.03 OrthoFinder
Dusal.0002s00030.1 33187933 Ribosomal RNA small subunit methyltransferase F,... 0.02 OrthoFinder
EOD14956 No alias SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. 0.02 OrthoFinder
OT_03G00060.1 No alias Ribosomal RNA small subunit methyltransferase F,... 0.03 OrthoFinder
PTI_02G04620.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type;... 0.03 OrthoFinder
Sro836_g209070.1 Contig1441.g13256 25S rRNA (cytosine(2870)-C(5))-methyltransferase 0.03 OrthoFinder
TP05G01050.1 No alias SAM-dependent methyltransferase RsmB/NOP2-type;... 0.02 OrthoFinder
Transcript_contig_4617 4617 Ribosomal RNA small subunit methyltransferase F,... 0.03 OrthoFinder
XM_002507880.1 MICPUN_97762, 97762 Ribosomal RNA small subunit methyltransferase F,... 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56656.1_9866 PRW56656 Ribosomal RNA methyltransferase NOP2 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494604.1_3134 KAA8494604 Putative 28S rRNA (cytosine(4447)-C(5))-methyltransferase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 81 288
IPR031341 Methyltr_RsmF_N 3 76
No external refs found!