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  5. XM_003056103.1

XM_003056103.1 (MicpuC2_31832, 31832)


Aliases : MicpuC2_31832, 31832

Description : Cell division cycle protein 48 (CDC48)


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003056103.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Cre10.g446250 30790306 Protein translocation.peroxisome.importomer... 0.02 OrthoFinder
Cz02g33220.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
XM_002507116.1 MICPUN_77437, 77437 Cell division cycle protein 48-like protein, expessed (CDC48) 0.02 OrthoFinder
XM_002507191.1 MICPUN_78168, 78168 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57417.1_8902 PRW57417 Ribosome biogenesis ATPase RIX7 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494064.1_3928 KAA8494064 Peroxisome biogenesis protein 6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004629 phospholipase C activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 133 193
IPR015415 Vps4_C 735 766
IPR003959 ATPase_AAA_core 246 375
IPR003959 ATPase_AAA_core 519 652
IPR003338 CDC4_N-term_subdom 31 112
IPR041569 AAA_lid_3 399 439
IPR041569 AAA_lid_3 674 716
No external refs found!