XM_003055181.1 (MicpuC2_12297, 12297)

Aliases : MicpuC2_12297, 12297

Description : Helicase, C-terminal; ATP-dependent DNA helicase RecQ, zinc-binding domain; RQC domain; DEAD/DEAH box helicase domain [Interproscan].

Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003055181.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000789.41	tig00000789_g4134.t1	ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00020961.28	tig00020961_g16648.t1	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cre04.g219750	30791451	Cell cycle.mitosis and meiosis.meiotic...	0.02	OrthoFinder
Cre12.g490150	30793094	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cz01g16070.t1	No alias	DEAD/DEAH box helicase domain [Interproscan].	0.02	OrthoFinder
Cz02g03170.t1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain;...	0.02	OrthoFinder
Cz03g24160.t1	No alias	Helicase, C-terminal; Transcription factor IIS,...	0.02	OrthoFinder
Cz12g21050.t1	No alias	ATP-dependent DNA helicase RecQ, zinc-binding domain;...	0.02	OrthoFinder
Dusal.0020s00028.1	33193689	Helicase, C-terminal; RQC domain; ATP-dependent DNA...	0.02	OrthoFinder
Dusal.0209s00011.1	33199677	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder
EOD12459	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
EOD15463	No alias	DEAD/DEAH box helicase domain [Interproscan].	0.01	OrthoFinder
EOD31600	No alias	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.01	OrthoFinder
EOD36303	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
OT_03G01700.1	No alias	Helicase, C-terminal; RQC domain; ATP-dependent DNA...	0.02	OrthoFinder
OT_04G00490.1	No alias	DEAD/DEAH box helicase domain; HRDC domain; Helicase,...	0.04	OrthoFinder
OT_05G04280.1	No alias	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
PTI_13G02100.1	No alias	Zinc finger, GRF-type; Helicase, C-terminal; DEAD/DEAH...	0.04	OrthoFinder
Sro108_g054090.1	Contig2294.g18989	Syndrome ATP-dependent helicase homolog	0.03	OrthoFinder
Sro2203_g318940.1	Contig3463.g26860	Bloom syndrome protein homolog	0.01	OrthoFinder
Sro408_g136820.1	Contig3193.g25217	Probable Werner syndrome ATP-dependent helicase homolog 1	0.02	OrthoFinder
Sro83_g044440.1	Contig4450.g33418	Syndrome ATP-dependent helicase homolog	0.01	OrthoFinder
Sro9_g007280.1	Contig4120.g31496	Probable Werner syndrome ATP-dependent helicase homolog 1	0.01	OrthoFinder
Vocar.0015s0339.1	32898912	DEAD/DEAH box helicase domain; Helicase, C-terminal;...	0.01	OrthoFinder
Vocar.0025s0103.1	32898387	RQC domain; DEAD/DEAH box helicase domain; Helicase,...	0.03	OrthoFinder
Vocar.0048s0026.1	32893654	Zinc finger, CCHC-type; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
XM_002499883.1	MICPUN_79105, 79105	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.04	OrthoFinder
XM_002502498.1	MICPUN_50295, 50295	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.06	OrthoFinder
XM_003062439.1	MicpuC2_29315, 29315	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.03	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493192.1_9493	KAA8493192	ATP-dependent DNA helicase RecQ	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Enrichment
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Enrichment
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Enrichment
CC	GO:0005963	magnesium-dependent protein serine/threonine phosphatase complex	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Enrichment
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Enrichment
BP	GO:0009166	nucleotide catabolic process	IEP	Enrichment
BP	GO:0010564	regulation of cell cycle process	IEP	Enrichment
BP	GO:0010948	negative regulation of cell cycle process	IEP	Enrichment
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Enrichment
MF	GO:0015020	glucuronosyltransferase activity	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Enrichment
MF	GO:0017056	structural constituent of nuclear pore	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019888	protein phosphatase regulator activity	IEP	Enrichment
CC	GO:0030896	checkpoint clamp complex	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Enrichment
BP	GO:0032954	regulation of cytokinetic process	IEP	Enrichment
BP	GO:0032955	regulation of division septum assembly	IEP	Enrichment
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Enrichment
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Enrichment
BP	GO:0045786	negative regulation of cell cycle	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0051301	cell division	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment
BP	GO:1901891	regulation of cell septum assembly	IEP	Enrichment
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Enrichment
CC	GO:1903293	phosphatase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	286	400
IPR032284	RecQ_Zn-bd	412	481
IPR011545	DEAD/DEAH_box_helicase_dom	75	244
IPR018982	RQC_domain	491	570

External Links

No external refs found!

XM_003055181.1 (MicpuC2_12297, 12297)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation