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  5. XM_003054843.1

XM_003054843.1 (MicpuC2_50046, 50046)


Aliases : MicpuC2_50046, 50046

Description : Helicase/UvrB, N-terminal; ERCC3/RAD25/XPB helicase, C-terminal domain; Helicase XPB/Ssl2, N-terminal domain [Interproscan].


Gene families : OG_01_0002469 (OrthoFinder) Phylogenetic Tree(s): OG0002469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003054843.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000949.17 tig00000949_g5729.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder
OT_03G04280.1 No alias Helicase XPB/Ssl2, N-terminal domain; Helicase/UvrB,... 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496129.1_2127 KAA8496129 TFIIH basal transcription factor complex helicase repB subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR032438 ERCC3_RAD25_C 512 765
IPR006935 Helicase/UvrB_N 328 486
IPR032830 XPB/Ssl2_N 75 198
No external refs found!