XM_002508999.1 (MICPUN_63095, 63095)

Aliases : MICPUN_63095, 63095

Description : DNA polymerase epsilon, catalytic subunit A, C-terminal; DNA-directed DNA polymerase, family B, exonuclease domain; DNA-directed DNA polymerase, family B, multifunctional domain [Interproscan].

Gene families : OG_01_0002052 (OrthoFinder) Phylogenetic Tree(s): OG0002052_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002508999.1
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000970.30	tig00000970_g5849.t1	Cell cycle.interphase.DNA replication.elongation.DNA...	0.03	OrthoFinder
Cpa\|evm.model.tig00000970.31	tig00000970_g5849.t1	DNA polymerase epsilon catalytic subunit A...	0.04	OrthoFinder
Cre03.g179961	30788184	Cell cycle.interphase.DNA replication.elongation.DNA...	0.08	OrthoFinder
Cz01g29080.t1	No alias	DNA-directed DNA polymerase, family B, multifunctional...	0.06	OrthoFinder
Dusal.0146s00025.1	33199498	DNA-directed DNA polymerase, family B, multifunctional...	0.06	OrthoFinder
EOD04907	No alias	Hypothetical protein [Ensembl].	0.08	OrthoFinder
EOD06573	No alias	DNA polymerase epsilon catalytic subunit A/1 [Ensembl].	0.08	OrthoFinder
OT_11G01900.1	No alias	DNA-directed DNA polymerase, family B, multifunctional...	0.13	OrthoFinder
PTI_27G01310.1	No alias	DNA-directed DNA polymerase, family B, multifunctional...	0.09	OrthoFinder
Sro1830_g300310.1	Contig662.g7834	Epsilon catalytic subunit A	0.02	OrthoFinder
TP03G08210.1	No alias	DNA-directed DNA polymerase, family B, exonuclease...	0.02	OrthoFinder
Transcript_contig_613	613	DNA-directed DNA polymerase, family B, exonuclease...	0.03	OrthoFinder
XM_003061673.1	MicpuC2_51203, 51203	DNA-directed DNA polymerase, family B, multifunctional...	0.09	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497716.1_6669	KAA8497716	DNA polymerase epsilon catalytic subunit A	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004146	dihydrofolate reductase activity	IEP	Enrichment
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
MF	GO:0004797	thymidine kinase activity	IEP	Enrichment
MF	GO:0005509	calcium ion binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006275	regulation of DNA replication	IEP	Enrichment
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Enrichment
MF	GO:0019206	nucleoside kinase activity	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
CC	GO:0031262	Ndc80 complex	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0043015	gamma-tubulin binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Enrichment
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
CC	GO:0099080	supramolecular complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006133	DNA-dir_DNA_pol_B_exonuc	104	454
IPR013697	DNA_pol_e_suA_C	1643	2053
IPR006134	DNA-dir_DNA_pol_B_multi_dom	761	1117

External Links

No external refs found!

XM_002508999.1 (MICPUN_63095, 63095)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation