XM_002508776.1 (MICPUN_62040, 62040)

Aliases : MICPUN_62040, 62040

Description : DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, C-terminal [Interproscan].

Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002508776.1
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021616.10	tig00021616_g22915.t1	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre09.g397845	30781329	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.03	OrthoFinder
EOD36720	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.03	OrthoFinder
OT_06G02660.1	No alias	DNA mismatch repair protein MutS, connector domain; DNA...	0.04	OrthoFinder
XM_003059453.1	MicpuC2_40215, 40215	DNA mismatch repair protein MutS, core; DNA mismatch...	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Enrichment
BP	GO:0000725	recombinational repair	IEP	Enrichment
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Enrichment
MF	GO:0004857	enzyme inhibitor activity	IEP	Enrichment
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Enrichment
BP	GO:0006302	double-strand break repair	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Enrichment
BP	GO:0009966	regulation of signal transduction	IEP	Enrichment
BP	GO:0010646	regulation of cell communication	IEP	Enrichment
BP	GO:0010921	regulation of phosphatase activity	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
CC	GO:0017119	Golgi transport complex	IEP	Enrichment
MF	GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity	IEP	Enrichment
MF	GO:0019208	phosphatase regulator activity	IEP	Enrichment
MF	GO:0019212	phosphatase inhibitor activity	IEP	Enrichment
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Enrichment
MF	GO:0019888	protein phosphatase regulator activity	IEP	Enrichment
BP	GO:0023051	regulation of signaling	IEP	Enrichment
BP	GO:0031399	regulation of protein modification process	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0035303	regulation of dephosphorylation	IEP	Enrichment
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Enrichment
MF	GO:0043015	gamma-tubulin binding	IEP	Enrichment
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Enrichment
BP	GO:0051336	regulation of hydrolase activity	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	1175	1364
IPR007696	DNA_mismatch_repair_MutS_core	774	1110
IPR007695	DNA_mismatch_repair_MutS-lik_N	446	560

External Links

No external refs found!

XM_002508776.1 (MICPUN_62040, 62040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation