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  5. XM_002507111.1

XM_002507111.1 (MICPUN_107316, 107316)


Aliases : MICPUN_107316, 107316

Description : Hypothetical protein (ACR2)


Gene families : OG_01_0002242 (OrthoFinder) Phylogenetic Tree(s): OG0002242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002507111.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.37 tig00021348_g20540.t1 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021348.38 tig00021348_g20541.t1 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre07.g322176 30775305 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz01g18090.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.03 OrthoFinder
Sro1898_g304130.1 Contig1148.g10962 Polymerase I subunit RPA2 0.04 OrthoFinder
TP12G01380.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase, beta... 0.03 OrthoFinder
Transcript_contig_57824 57824 RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.02 OrthoFinder
lcl|BLLF01001679.1_cds_GFH20688.1_15165 HaLaN_17850, GFH20688 DNA-directed RNA polymerase subunit beta 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58691.1_8067 PRW58691 DNA-directed RNA polymerase I subunit 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 462 526
IPR007120 DNA-dir_RNAP_su2_dom 691 1065
IPR007642 RNA_pol_Rpb2_2 207 374
IPR009674 Rpa2_dom_4 579 639
IPR007644 RNA_pol_bsu_protrusion 26 409
IPR007641 RNA_pol_Rpb2_7 1068 1185
No external refs found!