1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002506107.1

XM_002506107.1 (MICPUN_98316, 98316)


Aliases : MICPUN_98316, 98316

Description : tRNA methyltransferase, Trm1 [Interproscan].


Gene families : OG_01_0002502 (OrthoFinder) Phylogenetic Tree(s): OG0002502_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002506107.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.21 tig00021168_g19088.t1 RNA processing.RNA modification.rRNA/tRNA... 0.13 OrthoFinder
Cre10.g422000 30790663 RNA processing.RNA modification.rRNA/tRNA... 0.14 OrthoFinder
Cz05g03070.t1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.05 OrthoFinder
Dusal.0144s00018.1 33198197 tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
EOD10381 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.01 OrthoFinder
EOD31079 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.04 OrthoFinder
PTI_24G00880.1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.03 OrthoFinder
Sro2_g001870.2 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.02 OrthoFinder
TP01G00280.1 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58377 58377 tRNA methyltransferase, Trm1 [Interproscan]. 0.05 OrthoFinder
Vocar.0019s0179.1 32892771 tRNA methyltransferase, Trm1 [Interproscan]. 0.06 OrthoFinder
XM_003056694.1 MicpuC2_56104, 56104 tRNA methyltransferase, Trm1 [Interproscan]. 0.18 OrthoFinder
lcl|BLLF01001104.1_cds_GFH17151.1_11628 HaLaN_13716, GFH17151 TRNA (guanine(26)-N(2))-dimethyltransferase 0.06 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58454.1_7789 PRW58454 TRNA (guanine(26)-N(2))-dimethyltransferase 2 0.19 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEA Interproscan
BP GO:0008033 tRNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002905 Trm1 19 468
No external refs found!