1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002505940.1

XM_002505940.1 (MICPUN_107228, 107228)


Aliases : MICPUN_107228, 107228

Description : Sec23/Sec24, helical domain; Sec23/Sec24, trunk domain; Sec23/Sec24 beta-sandwich; Zinc finger, Sec23/Sec24-type; Gelsolin-like domain [Interproscan].


Gene families : OG_01_0001655 (OrthoFinder) Phylogenetic Tree(s): OG0001655_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505940.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.15 tig00001408_g8610.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder
Cre03.g180850 30786735, SEC23A Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder
Sro972_g226640.1 Contig330.g4393 Transport protein SEC23 0.03 OrthoFinder
Vocar.0015s0302.1 32898848 Sec23/Sec24, trunk domain; Gelsolin-like domain;... 0.02 OrthoFinder
lcl|BLLF01000060.1_cds_GFH06871.1_1348 HaLaN_01583, GFH06871 Protein transport protein SEC23 0.02 OrthoFinder
lcl|BLLF01003600.1_cds_GFH27747.1_22224 HaLaN_26121, GFH27747 Protein transport protein SEC23 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 401 503
IPR007123 Gelsolin-like_dom 630 716
IPR006900 Sec23/24_helical_dom 516 614
IPR006895 Znf_Sec23_Sec24 53 91
IPR006896 Sec23/24_trunk_dom 119 389
No external refs found!