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  5. XM_002505442.1

XM_002505442.1 (MICPUN_65501, 65501)


Aliases : MICPUN_65501, 65501

Description : WD40 repeat; Small-subunit processome, Utp12 [Interproscan].


Gene families : OG_01_0002276 (OrthoFinder) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505442.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.26 tig00021721_g23228.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre10.g438700 30790009 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder
Cz06g14100.t1 No alias WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.07 OrthoFinder
Dusal.0249s00016.1 33195366 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.06 OrthoFinder
EOD19547 No alias WD40 repeat [Interproscan]. 0.06 OrthoFinder
OT_14G00820.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.16 OrthoFinder
PTI_02G04550.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro1810_g299130.1 Contig2202.g18320 WD repeat domain 3 0.14 OrthoFinder
TP06G03730.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_56229 56229 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.05 OrthoFinder
XM_003059717.1 MicpuC2_18664, 18664 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01001813.1_cds_GFH21363.1_15840 HaLaN_18652, GFH21363 WD40 repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59665.1_6392 PRW59665 WD repeat-containing 3 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497047.1_776 KAA8497047 U3 small nucleolar RNA-associated protein 12 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 854 950
IPR001680 WD40_repeat 514 543
IPR001680 WD40_repeat 612 644
IPR001680 WD40_repeat 68 93
IPR001680 WD40_repeat 692 728
IPR001680 WD40_repeat 103 135
IPR001680 WD40_repeat 650 687
IPR001680 WD40_repeat 431 461
IPR001680 WD40_repeat 144 191
No external refs found!