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  5. XM_002504315.1

XM_002504315.1 (MICPUN_61497, 61497)


Aliases : MICPUN_61497, 61497

Description : MATH/TRAF domain; RING/Ubox like zinc-binding domain [Interproscan].


Gene families : OG_01_0000492 (OrthoFinder) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002504315.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.46 tig00000217_g19176.t1 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00001366.11 tig00001366_g8385.t1 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021350.30 tig00021350_g20646.t1 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder
Cpa|evm.model.tig00021502.2 tig00021502_g22052.t1 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder
Cre01.g030450 30788364 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder
Cre07.g336200 30774569 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.07 OrthoFinder
Cz04g08070.t1 No alias Ubiquitin-like domain; Peptidase C19, ubiquitin... 0.02 OrthoFinder
Cz07g24170.t1 No alias Ubiquitin carboxyl-terminal hydrolase, C-terminal;... 0.07 OrthoFinder
Dusal.0097s00017.1 33203700 Ubiquitin carboxyl-terminal hydrolase, C-terminal;... 0.03 OrthoFinder
Dusal.0436s00003.1 33203572 Peptidase C19, ubiquitin carboxyl-terminal hydrolase... 0.03 OrthoFinder
EOD33970 No alias MATH/TRAF domain; Ubiquitin carboxyl-terminal hydrolase... 0.04 OrthoFinder
Vocar.0047s0064.1 32899302 Ubiquitin carboxyl-terminal hydrolase, C-terminal;... 0.02 OrthoFinder
XM_003064792.1 MicpuC2_54740, 54740 MATH/TRAF domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33162.1_3473 PRW33162 Ubiquitin carboxyl-terminal hydrolase 26 isoform X1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 30 130
No external refs found!