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  5. XM_002504143.1

XM_002504143.1 (MICPUN_61138, 61138)


Aliases : MICPUN_61138, 61138

Description : Pre-mRNA polyadenylation factor Fip1 domain; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0004606 (OrthoFinder) Phylogenetic Tree(s): OG0004606_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002504143.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Cre17.g745547 30782778 No description available 0.02 OrthoFinder
Cz03g26100.t1 No alias Pre-mRNA polyadenylation factor Fip1 domain [Interproscan]. 0.03 OrthoFinder
Dusal.0813s00004.1 33201237 Pre-mRNA polyadenylation factor Fip1 domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89551 89551 Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 711 727
IPR001878 Znf_CCHC 730 743
IPR001878 Znf_CCHC 667 684
IPR001878 Znf_CCHC 644 661
IPR001878 Znf_CCHC 692 709
IPR007854 Fip1_dom 293 335
No external refs found!