1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002503791.1

XM_002503791.1 (MICPUN_59845, 59845)


Aliases : MICPUN_59845, 59845

Description : Nucleoporin, Nup133/Nup155-like, N-terminal [Interproscan].


Gene families : OG_01_0003419 (OrthoFinder) Phylogenetic Tree(s): OG0003419_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002503791.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Cre09.g394350 30781068, NUP155 Protein translocation.nucleus.nucleocytoplasmic... 0.08 OrthoFinder
Cz02g03220.t1 No alias Nucleoporin, Nup133/Nup155-like, N-terminal [Interproscan]. 0.05 OrthoFinder
Sro182_g079370.1 Contig1301.g12073 Pore complex protein NUP155 0.01 OrthoFinder
Transcript_contig_54507 54507 Nucleoporin, Nup133/Nup155-like, N-terminal [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0214.1 32897229 Nucleoporin, Nup133/Nup155-like, N-terminal [Interproscan]. 0.02 OrthoFinder
XM_003055065.1 MicpuC2_38075, 38075 Nucleoporin, Nup133/Nup155-like, N-terminal [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR014908 Nucleoporin_Nup133/Nup155_N 72 504
No external refs found!