XM_002503483.1 (MICPUN_94662, 94662)

Aliases : MICPUN_94662, 94662

Description : RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 1; RNA polymerase II, heptapeptide repeat, eukaryotic; RNA polymerase Rpb1, domain 7 [Interproscan].

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002503483.1
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000241.15	tig00000241_g20874.t1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder
Cpa\|evm.model.tig00022075.5	tig00022075_g23567.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00022075.6	tig00022075_g23568.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.04	OrthoFinder
Cre16.g680900	30777306, RPB1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder
Cz01g33020.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.07	OrthoFinder
Cz03g13040.t1	No alias	RNA polymerase II, heptapeptide repeat, eukaryotic; RNA...	0.02	OrthoFinder
Dusal.0157s00013.1	33200051	RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1,...	0.02	OrthoFinder
EOD16753	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.01	OrthoFinder
EOD21342	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
OT_10G01340.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.03	OrthoFinder
PTI_12G01840.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.04	OrthoFinder
Sro544_g163690.1	Contig3214.g25423	DNA-directed RNA polymerase subunit beta' (Fragment)	0.03	OrthoFinder
TP06G07080.1	No alias	RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,...	0.03	OrthoFinder
Vocar.0005s0135.1	32883912	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_003055558.1	MicpuC2_45178, 45178	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.03	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.04	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492229.1_5412	KAA8492229	DNA-directed RNA polymerase III subunit RPC1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004402	histone acetyltransferase activity	IEP	Enrichment
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006360	transcription by RNA polymerase I	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006473	protein acetylation	IEP	Enrichment
BP	GO:0006475	internal protein amino acid acetylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0016569	covalent chromatin modification	IEP	Enrichment
BP	GO:0016570	histone modification	IEP	Enrichment
BP	GO:0016573	histone acetylation	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016856	racemase and epimerase activity, acting on hydroxy acids and derivatives	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0018193	peptidyl-amino acid modification	IEP	Enrichment
BP	GO:0018205	peptidyl-lysine modification	IEP	Enrichment
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Enrichment
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0043543	protein acylation	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
MF	GO:0050043	lactate racemase activity	IEP	Enrichment
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000684	RNA_pol_II_repeat_euk	1549	1562
IPR000684	RNA_pol_II_repeat_euk	1668	1681
IPR000684	RNA_pol_II_repeat_euk	1577	1590
IPR000684	RNA_pol_II_repeat_euk	1612	1625
IPR000684	RNA_pol_II_repeat_euk	1626	1639
IPR000684	RNA_pol_II_repeat_euk	1584	1597
IPR000684	RNA_pol_II_repeat_euk	1654	1667
IPR000684	RNA_pol_II_repeat_euk	1523	1534
IPR000684	RNA_pol_II_repeat_euk	1640	1653
IPR000684	RNA_pol_II_repeat_euk	1563	1576
IPR000684	RNA_pol_II_repeat_euk	1570	1583
IPR000684	RNA_pol_II_repeat_euk	1647	1660
IPR000684	RNA_pol_II_repeat_euk	1556	1569
IPR000684	RNA_pol_II_repeat_euk	1682	1692
IPR000684	RNA_pol_II_repeat_euk	1704	1713
IPR000684	RNA_pol_II_repeat_euk	1619	1632
IPR000684	RNA_pol_II_repeat_euk	1633	1646
IPR000684	RNA_pol_II_repeat_euk	1598	1611
IPR000684	RNA_pol_II_repeat_euk	1591	1604
IPR000684	RNA_pol_II_repeat_euk	1535	1548
IPR000684	RNA_pol_II_repeat_euk	1605	1618
IPR007081	RNA_pol_Rpb1_5	802	1399
IPR007080	RNA_pol_Rpb1_1	15	328
IPR007066	RNA_pol_Rpb1_3	502	664
IPR007075	RNA_pol_Rpb1_6	868	1057
IPR000722	RNA_pol_asu	330	498
IPR007073	RNA_pol_Rpb1_7	1143	1277
IPR007083	RNA_pol_Rpb1_4	692	795

External Links

No external refs found!

XM_002503483.1 (MICPUN_94662, 94662)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation