1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002503267.1

XM_002503267.1 (MICPUN_108491, 108491)


Aliases : MICPUN_108491, 108491

Description : Proteasome component (PCI) domain; Eukaryotic translation initiation factor 3 subunit E, N-terminal [Interproscan].


Gene families : OG_01_0003111 (OrthoFinder) Phylogenetic Tree(s): OG0003111_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002503267.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.43 tig00000093_g3479.t1 Protein biosynthesis.translation... 0.09 OrthoFinder
Cre12.g498100 30792042, EIF3E Protein biosynthesis.translation... 0.12 OrthoFinder
Cz02g24110.t1 No alias Eukaryotic translation initiation factor 3 subunit E,... 0.08 OrthoFinder
EOD34374 No alias Eukaryotic translation initiation factor 3 subunit E,... 0.04 OrthoFinder
OT_13G02500.1 No alias Proteasome component (PCI) domain; Eukaryotic... 0.13 OrthoFinder
PTI_13G00740.1 No alias Eukaryotic translation initiation factor 3 subunit E,... 0.06 OrthoFinder
Sro361_g126450.1 Contig1094.g10570 Factor 3 subunit E 0.1 OrthoFinder
Sro810_g205830.1 Contig3420.g26661 Factor 3 subunit E 0.02 OrthoFinder
TP02G04360.1 No alias Eukaryotic translation initiation factor 3 subunit E,... 0.05 OrthoFinder
Transcript_contig_54921 54921 Proteasome component (PCI) domain; Eukaryotic... 0.02 OrthoFinder
Vocar.0006s0262.1 32894375 Eukaryotic translation initiation factor 3 subunit E,... 0.05 OrthoFinder
XM_003058376.1 MicpuC2_26784, 26784 Eukaryotic translation initiation factor 3 subunit E,... 0.09 OrthoFinder
lcl|BLLF01000057.1_cds_GFH06797.1_1274 HaLaN_01495, GFH06797 Eukaryotic translation initiation factor 3 subunit 6 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20555.1_5372 PRW20555 Eukaryotic translation initiation factor 3 subunit E 0.11 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493703.1_4465 KAA8493703 Eukaryotic translation initiation factor 3 subunit E 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000717 PCI_dom 294 391
IPR019010 eIF3e_N 10 142
No external refs found!