XM_002503125.1 (MICPUN_91017, 91017)

Aliases : MICPUN_91017, 91017

Description : SNF2 super family

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002503125.1
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000128.11	tig00000128_g7211.t1	ISWI chromatin-remodeling complex ATPase CHR17...	0.03	OrthoFinder
Cpa\|evm.model.tig00000144.188	tig00000144_g9184.t1	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00000217.25	tig00000217_g19158.t1	Chromatin structure-remodeling complex protein SYD...	0.02	OrthoFinder
Cpa\|evm.model.tig00000691.35	tig00000691_g3188.t1	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00000863.2	tig00000863_g4959.t1	TATA-binding protein-associated factor BTAF1...	0.02	OrthoFinder
Cpa\|evm.model.tig00021623.13	tig00021623_g23013.t1	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder
Cre03.g158550	30787160	CHD3-type chromatin-remodeling factor PICKLE...	0.04	OrthoFinder
Cre03.g179300	30786668	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder
Cre07.g325700	30774388	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre08.g377200	30773522	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder
Cre12.g508150	30793288	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder
Cre16.g647602	30777036	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cz02g31160.t1	No alias	Helicase, C-terminal; SLIDE domain; SNF2-related,...	0.02	OrthoFinder
Cz04g03240.t1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
Cz04g34020.t1	No alias	Helicase, C-terminal; Chromo domain; SNF2-related,...	0.02	OrthoFinder
Cz16g07230.t1	No alias	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
Dusal.0280s00012.1	33203409	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
Dusal.0357s00004.1	33189829	SNF2-related, N-terminal domain; Helicase, C-terminal;...	0.03	OrthoFinder
Dusal.0752s00002.1	33199466	Domain of unknown function DUF3535; SNF2-related,...	0.02	OrthoFinder
EOD05386	No alias	Chromo domain; Helicase, C-terminal; SNF2-related,...	0.02	OrthoFinder
EOD18155	No alias	High mobility group box domain; ISWI, HAND domain;...	0.03	OrthoFinder
EOD31071	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD36557	No alias	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
EOD36957	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD39269	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD41894	No alias	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
EOD41895	No alias	Helicase, C-terminal [Interproscan].	0.02	OrthoFinder
EOD41956	No alias	Chromo domain; Helicase, C-terminal; SNF2-related,...	0.02	OrthoFinder
OT_01G05670.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
OT_07G04020.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
OT_11G00460.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
OT_17G01920.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.04	OrthoFinder
PTI_05G01880.1	No alias	High mobility group box domain; Helicase, C-terminal;...	0.02	OrthoFinder
PTI_12G03630.1	No alias	SLIDE domain; Helicase, C-terminal; SNF2-related,...	0.02	OrthoFinder
Sro1151_g246720.1	Contig4710.g35023	CHD3-type chromatin-remodeling factor	0.01	OrthoFinder
Sro125_g060200.1	Contig2833.g22731	Chromodomain-helicase-DNA-binding protein	0.04	OrthoFinder
Sro1796_g298120.1	Contig441.g5925	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro264_g102660.1	Contig921.g9692	Probable chromatin-remodeling complex ATPase chain	0.03	OrthoFinder
Sro29_g019150.1	Contig1384.g12758	CHD3-type chromatin-remodeling factor CHR7	0.03	OrthoFinder
Sro2_g001340.1	Contig467.g6292	CHD3-type chromatin-remodeling factor PICKLE	0.02	OrthoFinder
Sro463_g148220.1	Contig3968.g30431	Probable chromatin-remodeling complex ATPase chain	0.03	OrthoFinder
Sro847_g210300.1	Contig4605.g34375	CHD3-type chromatin-remodeling factor	0.02	OrthoFinder
Transcript_contig_55210	55210	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
Transcript_contig_67487	67487	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
Vocar.0016s0256.1	32897896	SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;...	0.01	OrthoFinder
Vocar.0019s0100.1	32892722	Chromo domain; Helicase, C-terminal; SNF2-related,...	0.02	OrthoFinder
Vocar.0021s0108.1	32895927	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
Vocar.0032s0115.1	32893725	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
XM_003061313.1	MicpuC2_50939, 50939	SNF2 super family	0.03	OrthoFinder
XM_003061952.1	MicpuC2_51787, 51787	SNF2 super family	0.02	OrthoFinder
XM_003062178.1	MicpuC2_21039, 21039	SNF2 super family	0.02	OrthoFinder
XM_003062821.1	MicpuC2_52710, 52710	FY-rich, N-terminal; Helicase, C-terminal; FY-rich,...	0.03	OrthoFinder
XM_003064054.1	MicpuC2_54122, 54122	SNF2 super family	0.02	OrthoFinder
lcl\|BLLF01000001.1_cds_GFH05550.1_27	HaLaN_00030, GFH05550	SNF2-related, N-terminal domain [Interproscan].	0.03	OrthoFinder
lcl\|BLLF01000629.1_cds_GFH13582.1_8059	HaLaN_09500, GFH13582	Helicase, C-terminal [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01001714.1_cds_GFH20870.1_15347	HaLaN_18069, GFH20870	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60864.1_4118	PRW60864	SNF2 super family	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56740.1_9705	PRW56740	Chromatin-remodeling complex ATPase chain	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498955.1_7908	KAA8498955	SWI/SNF chromatin-remodeling complex subunit snf22	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Enrichment
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005856	cytoskeleton	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Enrichment
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006486	protein glycosylation	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
BP	GO:0009112	nucleobase metabolic process	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016831	carboxy-lyase activity	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0019239	deaminase activity	IEP	Enrichment
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Enrichment
MF	GO:0019899	enzyme binding	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
BP	GO:0043413	macromolecule glycosylation	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
BP	GO:0046112	nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	470	582
IPR015195	SLIDE	893	1004
IPR000330	SNF2_N	184	447
IPR015194	ISWI_HAND-dom	739	827
IPR020838	DBINO	65	117

External Links

No external refs found!

XM_002503125.1 (MICPUN_91017, 91017)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation