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  5. XM_002502979.1

XM_002502979.1 (MICPUN_59630, 59630)


Aliases : MICPUN_59630, 59630

Description : Zinc finger, DNA-directed DNA polymerase, family B, alpha; DNA polymerase alpha catalytic subunit, N-terminal domain; DNA-directed DNA polymerase, family B, exonuclease domain; DNA-directed DNA polymerase, family B, multifunctional domain [Interproscan].


Gene families : OG_01_0002710 (OrthoFinder) Phylogenetic Tree(s): OG0002710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002502979.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000237.42 tig00000237_g20491.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder
Cre04.g214350 30791491 Cell cycle.interphase.DNA replication.elongation.DNA... 0.1 OrthoFinder
Cz12g08090.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.06 OrthoFinder
EOD27476 No alias DNA polymerase alpha subunit 1 [Ensembl]. 0.09 OrthoFinder
OT_08G00710.1 No alias DNA polymerase alpha catalytic subunit, N-terminal... 0.15 OrthoFinder
PTI_00G03100.1 No alias DNA-directed DNA polymerase, family B, exonuclease... 0.09 OrthoFinder
Sro49_g028720.1 Contig2054.g17622 DNA polymerase alpha catalytic subunit (Fragment) 0.07 OrthoFinder
Transcript_contig_54971 54971 DNA-directed DNA polymerase, family B, exonuclease... 0.06 OrthoFinder
Vocar.0025s0165.1 32898389 DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09748.1_4225 HaLaN_04947, GFH09748 DNA-directed DNA polymerase, family B, exonuclease... 0.03 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09749.1_4226 HaLaN_04948, GFH09749 DNA polymerase 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60975.1_176 PRW60975 DNA polymerase alpha catalytic subunit 0.02 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490764.1_6020 KAA8490764 DNA polymerase alpha catalytic subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 492 823
IPR006134 DNA-dir_DNA_pol_B_multi_dom 889 1366
IPR024647 DNA_pol_a_cat_su_N 20 87
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1409 1637
No external refs found!