XM_002502114.1 (MICPUN_58651, 58651)


Aliases : MICPUN_58651, 58651

Description : U1 small nuclear ribonucleoprotein (snRNP)


Gene families : OG_01_0002840 (OrthoFinder) Phylogenetic Tree(s): OG0002840_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002502114.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Cre16.g656250 30778170 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Dusal.0911s00002.1 33191410 Hypothetical protein 0.02 OrthoFinder
Sro263_g102290.1 Contig612.g7551 U12 small nuclear ribonucleoprotein 35 kDa protein 0.02 OrthoFinder
XM_003057323.1 MicpuC2_56455, 56455 U1 small nuclear ribonucleoprotein (snRNP) 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 70 159
IPR000504 RRM_dom 171 239
No external refs found!