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  5. XM_002501986.1

XM_002501986.1 (MICPUN_82079, 82079)


Aliases : MICPUN_82079, 82079

Description : RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 1 [Interproscan].


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002501986.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.5 tig00022075_g23567.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cpa|evm.model.tig00022075.6 tig00022075_g23568.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g165750 30786879 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder
Cz01g33020.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.08 OrthoFinder
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.02 OrthoFinder
EOD16843 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
EOD21342 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
OT_02G03580.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.11 OrthoFinder
TP06G07080.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_003057453.1 MicpuC2_46863, 46863 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.06 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58100.1_7994 PRW58100 DNA-directed RNA polymerase III largest subunit 0.12 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57000.1_9043 PRW57000 DNA-directed RNA polymerase II subunit 1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007083 RNA_pol_Rpb1_4 742 847
IPR000722 RNA_pol_asu 374 540
IPR007066 RNA_pol_Rpb1_3 543 716
IPR007081 RNA_pol_Rpb1_5 854 1334
IPR007080 RNA_pol_Rpb1_1 34 372
No external refs found!