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  5. Cpa|evm.model.tig00022075.5

Cpa|evm.model.tig00022075.5 (tig00022075_g23567.t1)


Aliases : tig00022075_g23567.t1

Description : DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.5
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cz01g33020.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.04 OrthoFinder
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.04 OrthoFinder
Dusal.0157s00011.1 33200035 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
Dusal.0197s00003.1 33188524 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.03 OrthoFinder
EOD16753 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.01 OrthoFinder
EOD21342 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
OT_02G03580.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
OT_10G01340.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.01 OrthoFinder
PTI_12G01840.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.01 OrthoFinder
XM_002501986.1 MICPUN_82079, 82079 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.05 OrthoFinder
XM_002503483.1 MICPUN_94662, 94662 RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_003057453.1 MicpuC2_46863, 46863 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58100.1_7994 PRW58100 DNA-directed RNA polymerase III largest subunit 0.03 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492229.1_5412 KAA8492229 DNA-directed RNA polymerase III subunit RPC1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 113 605
No external refs found!