XM_002500796.1 (MICPUN_56721, 56721)

Aliases : MICPUN_56721, 56721

Description : Condensin complex component

Gene families : OG_01_0001971 (OrthoFinder) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002500796.1
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000711.41	tig00000711_g3404.t1	Cell cycle.mitosis and meiosis.chromatin...	0.06	OrthoFinder
Cre12.g493400	30791789, SMC4	Cell cycle.mitosis and meiosis.chromatin...	0.05	OrthoFinder
Cz03g14220.t1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.06	OrthoFinder
Cz03g14230.t1	No alias	RecF/RecN/SMC, N-terminal [Interproscan].	0.08	OrthoFinder
Dusal.0297s00010.1	33197376	RecF/RecN/SMC, N-terminal [Interproscan].	0.04	OrthoFinder
Dusal.0297s00013.1	33197366	RecF/RecN/SMC, N-terminal [Interproscan].	0.05	OrthoFinder
EOD07120	No alias	RecF/RecN/SMC, N-terminal [Interproscan].	0.08	OrthoFinder
EOD10750	No alias	RecF/RecN/SMC, N-terminal [Interproscan].	0.08	OrthoFinder
EOD30554	No alias	SMCs flexible hinge [Interproscan].	0.07	OrthoFinder
EOD40964	No alias	RecF/RecN/SMC, N-terminal [Interproscan].	0.02	OrthoFinder
OT_06G01300.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.13	OrthoFinder
PTI_03G05440.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.05	OrthoFinder
Sro1170_g248720.1	Contig3531.g27301	Structural maintenance of chromosomes protein 4 (Fragment)	0.05	OrthoFinder
TP14G01310.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.05	OrthoFinder
Vocar.0031s0036.1	32890031	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.03	OrthoFinder
XM_003059384.1	MicpuC2_33825, 33825	Condensin complex component	0.08	OrthoFinder
lcl\|BLLF01001573.1_cds_GFH20090.1_14567	HaLaN_17159, GFH20090	Structural maintenance of chromosomes protein 4	0.03	OrthoFinder
lcl\|BLLF01001573.1_cds_GFH20092.1_14569	HaLaN_17161, GFH20092	Structural maintenance of chromosomes protein	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57046.1_8805	PRW57046	Structural maintenance of chromosomes 4	0.07	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499969.1_8922	KAA8499969	Structural maintenance of chromosomes protein 4	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	Enrichment
MF	GO:0003774	motor activity	IEP	Enrichment
MF	GO:0003777	microtubule motor activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006323	DNA packaging	IEP	Enrichment
BP	GO:0006928	movement of cell or subcellular component	IEP	Enrichment
BP	GO:0007017	microtubule-based process	IEP	Enrichment
BP	GO:0007018	microtubule-based movement	IEP	Enrichment
BP	GO:0007076	mitotic chromosome condensation	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
MF	GO:0008092	cytoskeletal protein binding	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
BP	GO:0030261	chromosome condensation	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	17	1219
IPR010935	SMC_hinge	546	665

External Links

No external refs found!

XM_002500796.1 (MICPUN_56721, 56721)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation