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  5. XM_002500509.1

XM_002500509.1 (MICPUN_105289, 105289)


Aliases : MICPUN_105289, 105289

Description : Clathrin, heavy chain, propeller repeat; Clathrin, heavy chain, linker, core motif; Clathrin, heavy chain/VPS, 7-fold repeat; Clathrin-H-link [Interproscan].


Gene families : OG_01_0002678 (OrthoFinder) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002500509.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cz07g27260.t1 No alias Clathrin, heavy chain, propeller repeat; Clathrin, heavy... 0.03 OrthoFinder
Dusal.0114s00011.1 33202239 Clathrin-H-link; Clathrin, heavy chain, linker, core... 0.04 OrthoFinder
OT_01G01810.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.02 OrthoFinder
PTI_15G00340.1 No alias Clathrin, heavy chain/VPS, 7-fold repeat;... 0.03 OrthoFinder
Sro1407_g270000.1 Contig1773.g15693 Clathrin heavy chain 1 0.04 OrthoFinder
Transcript_contig_54377 54377 Clathrin, heavy chain/VPS, 7-fold repeat;... 0.02 OrthoFinder
lcl|BLLF01003272.1_cds_GFH26883.1_21360 HaLaN_25106, GFH26883 Clathrin heavy chain 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61204.1_268 PRW61204 Clathrin heavy chain 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006597 spermine biosynthetic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0008215 spermine metabolic process IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0022414 reproductive process IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
BP GO:0051321 meiotic cell cycle IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR015348 Clathrin_H-chain_linker_core 346 366
IPR022365 Clathrin_H-chain_propeller_rpt 153 195
IPR022365 Clathrin_H-chain_propeller_rpt 18 53
IPR000547 Clathrin_H-chain/VPS_repeat 991 1131
IPR000547 Clathrin_H-chain/VPS_repeat 848 979
IPR000547 Clathrin_H-chain/VPS_repeat 553 690
IPR000547 Clathrin_H-chain/VPS_repeat 699 839
IPR000547 Clathrin_H-chain/VPS_repeat 1434 1576
IPR000547 Clathrin_H-chain/VPS_repeat 1141 1279
IPR000547 Clathrin_H-chain/VPS_repeat 1286 1428
No external refs found!