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  5. XM_002500494.1

XM_002500494.1 (MICPUN_93697, 93697)


Aliases : MICPUN_93697, 93697

Description : RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 5; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 4 [Interproscan].


Gene families : OG_01_0001898 (OrthoFinder) Phylogenetic Tree(s): OG0001898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002500494.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000158.16 tig00000158_g10129.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder
Cre02.g075150 30785072, RPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 OrthoFinder
Cz11g25180.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.05 OrthoFinder
Dusal.0377s00021.1 33195250 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.02 OrthoFinder
EOD11634 No alias RNA polymerase, beta subunit, protrusion; DNA-directed... 0.04 OrthoFinder
EOD30410 No alias RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2,... 0.08 OrthoFinder
OT_01G01700.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.07 OrthoFinder
Sro688_g187330.1 Contig1782.g15779 Polymerase II subunit RPB2 0.02 OrthoFinder
Transcript_contig_78214 78214 RNA polymerase, beta subunit, protrusion; RNA polymerase... 0.01 OrthoFinder
lcl|BLLF01000259.1_cds_GFH09745.1_4222 HaLaN_04943, GFH09745 DNA-directed RNA polymerase subunit beta 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61164.1_363 PRW61164 DNA-directed RNA polymerase II subunit RPB2 isoform A 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61165.1_364 PRW61165 DNA-directed RNA polymerase II subunit RPB2 isoform B 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498746.1_7699 KAA8498746 DNA-directed RNA polymerase II subunit 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 714 1084
IPR007642 RNA_pol_Rpb2_2 209 398
IPR007641 RNA_pol_Rpb2_7 1086 1177
IPR007647 RNA_pol_Rpb2_5 655 707
IPR007645 RNA_pol_Rpb2_3 471 535
IPR007646 RNA_pol_Rpb2_4 570 631
IPR007644 RNA_pol_bsu_protrusion 31 446
No external refs found!