XM_002500469.1 (MICPUN_56935, 56935)

Aliases : MICPUN_56935, 56935

Description : U box domain; WD40 repeat; Pre-mRNA-splicing factor 19 [Interproscan].

Gene families : OG_01_0001896 (OrthoFinder) Phylogenetic Tree(s): OG0001896_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002500469.1
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001501.3	tig00001501_g9219.t1	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cpa\|evm.model.tig00001501.4	tig00001501_g9219.t1	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Cpa\|evm.model.tig00021493.5	tig00021493_g21848.t1	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder
Dusal.0061s00009.1	33190670	Pre-mRNA-splicing factor 19 [Interproscan].	0.02	OrthoFinder
OT_03G01690.1	No alias	Pre-mRNA-splicing factor 19; WD40 repeat [Interproscan].	0.04	OrthoFinder
PTI_00G01050.1	No alias	Pre-mRNA-splicing factor 19; WD40 repeat [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000024.1_cds_PRW20323.1_5556	PRW20323	Spliceosome nuclear pre-mRNA splicing factor	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
CC	GO:0030120	vesicle coat	IEP	Enrichment
CC	GO:0030127	COPII vesicle coat	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048193	Golgi vesicle transport	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	3	53
IPR013915	Pre-mRNA_splic_Prp19	66	131
IPR001680	WD40_repeat	343	371
IPR001680	WD40_repeat	381	412
IPR001680	WD40_repeat	259	287

External Links

No external refs found!