1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002499792.1

XM_002499792.1 (MICPUN_78530, 78530)


Aliases : MICPUN_78530, 78530

Description : Radical SAM protein with TRAM and UPF0004 domains


Gene families : OG_01_0000871 (OrthoFinder) Phylogenetic Tree(s): OG0000871_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002499792.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
EOD15488 No alias Methylthiotransferase, N-terminal; PPIC-type PPIASE... 0.02 OrthoFinder
EOD42013 No alias TRAM domain; Methylthiotransferase, N-terminal; Radical... 0.02 OrthoFinder
PTI_06G01770.1 No alias Radical SAM; Methylthiotransferase, N-terminal [Interproscan]. 0.02 OrthoFinder
Sro1534_g280440.1 Contig2033.g17455 TRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.01 OrthoFinder
lcl|BLLF01000978.1_cds_GFH16307.1_10784 HaLaN_12699, GFH16307 Radical SAM; Methylthiotransferase, N-terminal [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59225.1_6865 PRW59225 TRNA-2-methylthio-N(6)-dimethylallyladenosin e synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0035596 methylthiotransferase activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 157 349
IPR002792 TRAM_dom 405 487
IPR013848 Methylthiotransferase_N 4 106
No external refs found!