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  5. lcl|BLLF01004640.1_cds_GFH29996.1_24473

lcl|BLLF01004640.1_cds_GFH29996.1_24473 (HaLaN_28762, GFH29996)


Aliases : HaLaN_28762, GFH29996

Description : TRNA pseudouridine synthase B


Gene families : OG_01_0000746 (OrthoFinder) Phylogenetic Tree(s): OG0000746_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01004640.1_cds_GFH29996.1_24473
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
Sro9_g007670.1 Contig4120.g31535 Pseudouridine synthase B 0.01 OrthoFinder
Transcript_contig_56333 56333 tRNA pseudouridylate synthase B, C-terminal;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR032819 TruB_C 167 208
IPR002501 PsdUridine_synth_N 103 161
IPR002501 PsdUridine_synth_N 1 68
No external refs found!