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  5. lcl|BLLF01004020.1_cds_GFH28754.1_23231

lcl|BLLF01004020.1_cds_GFH28754.1_23231 (HaLaN_27296, GFH28754)


Aliases : HaLaN_27296, GFH28754

Description : 2'-O-ribose RNA methyltransferase SPB1 homolog


Gene families : OG_01_0001052 (OrthoFinder) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01004020.1_cds_GFH28754.1_23231
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cre03.g145907 30787606 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder
Cre12.g529500 30792231 No description available 0.05 OrthoFinder
Cz10g22050.t1 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.04 OrthoFinder
EOD10706 No alias Ribosomal RNA methyltransferase FtsJ domain; Ribosomal... 0.02 OrthoFinder
OT_16G00640.1 No alias Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.02 OrthoFinder
PTI_07G00840.1 No alias Ribosomal RNA methyltransferase, Spb1, C-terminal;... 0.03 OrthoFinder
Sro945_g223150.1 Contig53.g396 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase 0.03 OrthoFinder
TP18G02340.1 No alias Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55971 55971 Ribosomal RNA methyltransferase, Spb1, C-terminal [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56474 56474 Ribosomal RNA methyltransferase Spb1, domain of unknown... 0.03 OrthoFinder
XM_002508465.1 MICPUN_85499, 85499 Ribosomal RNA methyltransferase FtsJ domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56316.1_10006 PRW56316 AdoMet-dependent rRNA methyltransferase spb1 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR012920 rRNA_MeTfrase_Spb1_C 4 165
No external refs found!