1. Home
  2. Species
  3. Haematococcus lacustris
  4. Sequence
  5. lcl|BLLF01003854.1_cds_GFH28385.1_22862

lcl|BLLF01003854.1_cds_GFH28385.1_22862 (HaLaN_26865, GFH28385)


Aliases : HaLaN_26865, GFH28385

Description : RNA helicase


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01003854.1_cds_GFH28385.1_22862
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.11 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.01 OrthoFinder
Cpa|evm.model.tig00000441.12 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.05 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.03 OrthoFinder
Dusal.0476s00004.1 33198122 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.06 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.06 OrthoFinder
PTI_09G03560.1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
PTI_11G00580.1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.05 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.04 OrthoFinder
Sro967_g225820.1 Contig1083.g10521 Dependent RNA helicase 0.03 OrthoFinder
SymbC1.scaffold1391.10 1391.10 DEAD/DEAH box helicase domain; Domain of unknown... 0.01 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.02 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.02 OrthoFinder
Vocar.0019s0050.1 32892772 Domain of unknown function DUF4217; DEAD/DEAH box... 0.02 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.03 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.03 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.04 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
lcl|BLLF01000456.1_cds_GFH11993.1_6470 HaLaN_07604, GFH11993 RNA helicase 0.07 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59153.1_7055 PRW59153 ATP-dependent RNA helicase HAS1 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33079.1_3833 PRW33079 DEAD-box ATP-dependent RNA helicase 32 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 10 94
No external refs found!