Cpa|evm.model.tig00021589.16 (tig00021589_g22722.t1)

Aliases : tig00021589_g22722.t1

Description : Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica

Gene families : OG_01_0000377 (OrthoFinder) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021589.16
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
Cz06g07100.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz10g08010.t1	No alias	La-type HTH domain [Interproscan].	0.02	OrthoFinder
Cz13g03150.t1	No alias	La protein, RNA-binding domain; RNA recognition motif...	0.05	OrthoFinder
Dusal.0100s00011.1	33202450	La-type HTH domain; RNA recognition motif domain; La...	0.02	OrthoFinder
EOD26743	No alias	Protein of unknown function (DUF3223); La-type HTH...	0.02	OrthoFinder
OT_01G04880.1	No alias	RNA recognition motif domain; La-type HTH domain [Interproscan].	0.06	OrthoFinder
Transcript_contig_8474	8474	RNA recognition motif domain; La-type HTH domain [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01003364.1_cds_GFH27142.1_21619	HaLaN_25415, GFH27142	RNA binding protein	0.03	OrthoFinder
lcl\|BLLF01003838.1_cds_GFH28342.1_22819	HaLaN_26819, GFH28342	HTH La-type RNA-binding domain-containing protein	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56866.1_9788	PRW56866	La-related 1A isoform X1	0.03	OrthoFinder
lcl\|LHPG02000011.1_cds_PRW45723.1_1269	PRW45723	La 1	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499276.1_8229	KAA8499276	RNA recognition motif domain; La-type HTH domain [Interproscan].	0.02	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494867.1_3397	KAA8494867	Lupus La protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Enrichment
MF	GO:0003883	CTP synthase activity	IEP	Enrichment
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004615	phosphomannomutase activity	IEP	Enrichment
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Enrichment
CC	GO:0005741	mitochondrial outer membrane	IEP	Enrichment
CC	GO:0005783	endoplasmic reticulum	IEP	Enrichment
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006144	purine nucleobase metabolic process	IEP	Enrichment
BP	GO:0006163	purine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
MF	GO:0008017	microtubule binding	IEP	Enrichment
BP	GO:0009112	nucleobase metabolic process	IEP	Enrichment
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Enrichment
MF	GO:0015631	tubulin binding	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016859	cis-trans isomerase activity	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Enrichment
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
MF	GO:0030145	manganese ion binding	IEP	Enrichment
CC	GO:0031090	organelle membrane	IEP	Enrichment
CC	GO:0031966	mitochondrial membrane	IEP	Enrichment
CC	GO:0031968	organelle outer membrane	IEP	Enrichment
CC	GO:0031974	membrane-enclosed lumen	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042440	pigment metabolic process	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
CC	GO:0043233	organelle lumen	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0046112	nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0046148	pigment biosynthetic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
CC	GO:0070013	intracellular organelle lumen	IEP	Enrichment
BP	GO:0072521	purine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
CC	GO:0098588	bounding membrane of organelle	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006630	La_HTH	263	319
IPR000719	Prot_kinase_dom	8	101
IPR014886	La_xRRM	457	552
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	129	206

External Links

No external refs found!

Cpa|evm.model.tig00021589.16 (tig00021589_g22722.t1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation