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  5. lcl|BLLF01003094.1_cds_GFH26329.1_20806

lcl|BLLF01003094.1_cds_GFH26329.1_20806 (HaLaN_24462, GFH26329)


Aliases : HaLaN_24462, GFH26329

Description : Suppressor of forked [Interproscan].


Gene families : OG_01_0001807 (OrthoFinder) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01003094.1_cds_GFH26329.1_20806
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.10 tig00000605_g2475.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cpa|evm.model.tig00000605.11 tig00000605_g2478.t1 rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre10.g428750 30790321 Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder
Cz01g27020.t1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.14 OrthoFinder
EOD17851 No alias Suppressor of forked [Interproscan]. 0.04 OrthoFinder
PTI_19G01960.1 No alias S1 domain [Interproscan]. 0.06 OrthoFinder
Sro264_g102530.1 Contig921.g9679 Protein RRP5 0.08 OrthoFinder
TP17G00890.1 No alias Suppressor of forked [Interproscan]. 0.02 OrthoFinder
Transcript_contig_69303 69303 Hypothetical protein 0.03 OrthoFinder
Transcript_contig_78480 78480 S1 domain [Interproscan]. 0.04 OrthoFinder
Vocar.0005s0239.1 32883847 S1 domain; Suppressor of forked [Interproscan]. 0.02 OrthoFinder
XM_002504294.1 MICPUN_107434, 107434 Hypothetical protein (RRP5) 0.06 OrthoFinder
XM_003064819.1 MicpuC2_54811, 54811 Suppressor of forked; S1 domain [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55969.1_10165 PRW55969 RNA binding rRNA processing 0.1 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20900.1_4989 PRW20900 RRP5-like protein 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497028.1_757 KAA8497028 RRNA biogenesis protein rrp5 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR008847 Suf 26 149
No external refs found!