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  5. lcl|BLLF01002728.1_cds_GFH25131.1_19608

lcl|BLLF01002728.1_cds_GFH25131.1_19608 (HaLaN_23045, GFH25131)


Aliases : HaLaN_23045, GFH25131

Description : DNA-directed RNA polymerase subunit


Gene families : OG_01_0002297 (OrthoFinder) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002728.1_cds_GFH25131.1_19608
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cre12.g529600 30792110 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.08 OrthoFinder
Cz05g31150.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.03 OrthoFinder
Dusal.0073s00015.1 33194603 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
EOD22189 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.05 OrthoFinder
OT_14G01020.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
PTI_00G04260.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
Sro258_g101130.1 Contig315.g4199 DNA-directed RNA polymerase subunit beta' (Fragment) 0.02 OrthoFinder
TP06G00570.1 No alias RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1,... 0.03 OrthoFinder
Vocar.0037s0083.1 32897652 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.03 OrthoFinder
XM_002505754.1 MICPUN_65110, 65110 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.05 OrthoFinder
XM_003063796.1 MicpuC2_36623, 36623 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.05 OrthoFinder
lcl|LHPG02000006.1_cds_PRW58030.1_8585 PRW58030 DNA-directed RNA polymerase I complex large subunit Nuc1... 0.04 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493983.1_3847 KAA8493983 DNA-directed RNA polymerase I subunit rpa1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 210 242
IPR007083 RNA_pol_Rpb1_4 128 203
IPR007081 RNA_pol_Rpb1_5 1 58
No external refs found!