1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00021521.24

Cpa|evm.model.tig00021521.24 (tig00021521_g22088.t1)


Aliases : tig00021521_g22088.t1

Description : CDK5RAP1-like protein OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000871 (OrthoFinder) Phylogenetic Tree(s): OG0000871_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021521.24
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Dusal.0109s00013.1 33202369 TRAM domain; Radical SAM; Methylthiotransferase,... 0.02 OrthoFinder
Transcript_contig_55356 55356 Methylthiotransferase, N-terminal; Radical SAM; TRAM... 0.01 OrthoFinder
XM_003063549.1 MicpuC2_45957, 45957 TRAM domain; Radical SAM; Methylthiotransferase,... 0.03 OrthoFinder
lcl|BLLF01000978.1_cds_GFH16307.1_10784 HaLaN_12699, GFH16307 Radical SAM; Methylthiotransferase, N-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0035596 methylthiotransferase activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 202 401
IPR013848 Methylthiotransferase_N 51 153
No external refs found!