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  5. lcl|BLLF01002100.1_cds_GFH22687.1_17164

lcl|BLLF01002100.1_cds_GFH22687.1_17164 (HaLaN_20193, GFH22687)


Aliases : HaLaN_20193, GFH22687

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002464 (OrthoFinder) Phylogenetic Tree(s): OG0002464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002100.1_cds_GFH22687.1_17164
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021179.21 tig00021179_g19236.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre06.g278175 30779333 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder
Cz09g19080.t1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
OT_07G01850.1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
PTI_01G11550.1 No alias WD40 repeat [Interproscan]. 0.06 OrthoFinder
Sro382_g131180.1 Contig4152.g31702 SnoRNP-associated protein-like EMB2271 0.03 OrthoFinder
XM_002503879.1 MICPUN_60028, 60028 U3 snornp-associated-like WD40 repeat-containing protein 0.05 OrthoFinder
XM_003054970.1 MicpuC2_50325, 50325 U3 snornp-associated-like WD40 repeat-containing protein 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20874.1_5038 PRW20874 U3 small nucleolar RNA-interacting 2 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498077.1_7030 KAA8498077 U3 snoRNP-associated protein-like YAOH 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 53 88
No external refs found!