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  5. lcl|BLLF01001918.1_cds_GFH21854.1_16331

lcl|BLLF01001918.1_cds_GFH21854.1_16331 (HaLaN_19229, GFH21854)


Aliases : HaLaN_19229, GFH21854

Description : U box domain; WD40 repeat [Interproscan].


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001918.1_cds_GFH21854.1_16331
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178550 30787129 Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder
Cre09.g390356 30780572 No description available 0.02 OrthoFinder
Cz03g26190.t1 No alias U box domain [Interproscan]. 0.03 OrthoFinder
Cz03g33080.t1 No alias U box domain [Interproscan]. 0.03 OrthoFinder
Dusal.0073s00017.1 33194600 WD40 repeat; U box domain [Interproscan]. 0.02 OrthoFinder
EOD03965 No alias Rab5L, rab family GTPase [Ensembl]. 0.02 OrthoFinder
EOD08759 No alias U box domain [Interproscan]. 0.01 OrthoFinder
EOD36652 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Sro43_g025910.1 Contig2453.g20057 SAM and U-box domain-containing protein 1 0.01 OrthoFinder
SymbC1.scaffold3885.5 3885.5 Protein kinase domain [Interproscan]. 0.02 OrthoFinder
UNPLg00252.t1 No alias Ankyrin repeat-containing domain; U box domain; Ankyrin... 0.02 OrthoFinder
Vocar.0059s0023.1 32893612 U box domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 137 200
IPR001680 WD40_repeat 289 324
IPR001680 WD40_repeat 329 364
IPR001680 WD40_repeat 411 443
IPR001680 WD40_repeat 371 406
IPR001680 WD40_repeat 250 284
No external refs found!