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  5. lcl|BLLF01001655.1_cds_GFH20545.1_15022

lcl|BLLF01001655.1_cds_GFH20545.1_15022 (HaLaN_17686, GFH20545)


Aliases : HaLaN_17686, GFH20545

Description : PHD-type domain-containing protein


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001655.1_cds_GFH20545.1_15022
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053250 30789240 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre07.g350100 30774786 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre13.g578501 30784198 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.02 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.01 OrthoFinder
Sro106_g053630.1 Contig1122.g10760 Strawberry notch homolog 2 0.03 OrthoFinder
SymbC1.scaffold1482.6 1482.6 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
Vocar.0027s0108.1 32887103 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58082.1_8009 PRW58082 Strawberry notch-like protein 1-like 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58205.1_7731 PRW58205 Strawberry notch-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 37 98
IPR026937 SBNO_Helicase_C_dom 204 270
No external refs found!