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  5. lcl|BLLF01001246.1_cds_GFH18086.1_12563

lcl|BLLF01001246.1_cds_GFH18086.1_12563 (HaLaN_14829, GFH18086)


Aliases : HaLaN_14829, GFH18086

Description : Ribulose bisphosphate carboxylase small chain


Gene families : OG_01_0001359 (OrthoFinder) Phylogenetic Tree(s): OG0001359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01001246.1_cds_GFH18086.1_12563
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre02.g120100 30785539, RBCS1 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder
Cre02.g120150 30786468, RBCS2 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder
Cz17g13100.t1 No alias Ribulose bisphosphate carboxylase small chain, domain... 0.04 OrthoFinder
Dusal.1014s00004.1 33200029 Ribulose bisphosphate carboxylase small chain, domain... 0.03 OrthoFinder
OT_18G01930.1 No alias Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Sro51_chlor_g030110.1 RbcS RbcS 0.03 OrthoFinder
TPCG00230.1 No alias Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Vocar.0033s0065.1 32886362 Ribulose bisphosphate carboxylase small chain, domain... 0.05 OrthoFinder
Vocar.0033s0067.1 32886514 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Vocar.0033s0068.1 32886323 Ribulose bisphosphate carboxylase small chain, domain... 0.04 OrthoFinder
Vocar.0033s0069.1 32886463 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Vocar.0033s0072.1 32886356 Ribulose bisphosphate carboxylase small chain, domain... 0.05 OrthoFinder
XM_002500716.1 MICPUN_104787, 104787 Ribulose bisphosphate carboxylase small chain 1,... 0.04 OrthoFinder
XM_003064578.1 MicpuC2_37117, 37117 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
XM_003064579.1 MicpuC2_66674, 66674 Ribulose bisphosphate carboxylase small chain, domain... 0.05 OrthoFinder
lcl|BLLF01000015.1_cds_GFH05957.1_434 HaLaN_00508, GFH05957 Ribulose bisphosphate carboxylase small chain 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60509.1_4708 PRW60509 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 0.07 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60779.1_4709 PRW60779 Ribulose bisphosphate small subunit precursor 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 58 172
No external refs found!