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  5. Cpa|evm.model.tig00021433.2

Cpa|evm.model.tig00021433.2 (tig00021433_g21256.t1)


Aliases : tig00021433_g21256.t1

Description : DNA topoisomerase 2 OS=Arabidopsis thaliana


Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021433.2
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cz11g19140.t1 No alias DNA topoisomerase, type IIA, subunit B, domain 2; TOPRIM... 0.02 OrthoFinder
EOD17812 No alias Putative DNA topoisomerase II [Ensembl]. 0.07 OrthoFinder
EOD22469 No alias DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.03 OrthoFinder
OT_13G00120.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit B,... 0.03 OrthoFinder
PTI_12G02730.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.02 OrthoFinder
Sro150_g068880.1 Contig1519.g13851 DNA topoisomerase 2 top-2 0.03 OrthoFinder
SymbC1.scaffold924.9 924.9 Histidine kinase/HSP90-like ATPase [Interproscan]. 0.02 OrthoFinder
TP10G01150.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.02 OrthoFinder
TP10G02490.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.03 OrthoFinder
TP10G02750.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.02 OrthoFinder
Transcript_contig_55997 55997 TOPRIM domain; DNA topoisomerase, type IIA, subunit B,... 0.01 OrthoFinder
Vocar.0024s0199.1 32890400 Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA... 0.02 OrthoFinder
XM_002501981.1 MICPUN_58377, 58377 DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.03 OrthoFinder
XM_003057460.1 MicpuC2_46870, 46870 TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.04 OrthoFinder
lcl|BLLF01001294.1_cds_GFH18390.1_12867 HaLaN_15188, GFH18390 DNA topoisomerase 2 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497819.1_6772 KAA8497819 DNA topoisomerase 2 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492722.1_2458 KAA8492722 DNA topoisomerase 2 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 593 685
IPR003594 HATPase_C 411 503
No external refs found!