lcl|BLLF01000513.1_cds_GFH12539.1_7016 (HaLaN_08248, GFH12539)

Aliases : HaLaN_08248, GFH12539

Description : PAS domain-containing protein

Gene families : OG_01_0000027 (OrthoFinder) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|BLLF01000513.1_cds_GFH12539.1_7016
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000405.46	tig00000405_g477.t1	Probable histidine kinase 5 OS=Oryza sativa subsp. japonica	0.01	OrthoFinder
Cpa\|evm.model.tig00021522.9	tig00021522_g22101.t1	No description available	0.03	OrthoFinder
Cpa\|evm.model.tig00021537.33	tig00021537_g22286.t1	No description available	0.02	OrthoFinder
Cre02.g142166	30786493	No description available	0.03	OrthoFinder
Cre05.g233650	30783131, FXL9	No description available	0.03	OrthoFinder
Cre09.g397000	30780571	No description available	0.02	OrthoFinder
Cre10.g457400	30790407	No description available	0.02	OrthoFinder
Cre17.g698903	30781618	No description available	0.01	OrthoFinder
Cre17.g708000	30782648, FAP260	No description available	0.02	OrthoFinder
Cz03g02250.t1	No alias	PAS domain [Interproscan].	0.04	OrthoFinder
Cz03g08250.t1	No alias	PAS domain [Interproscan].	0.02	OrthoFinder
Cz03g29010.t1	No alias	PAS domain [Interproscan].	0.03	OrthoFinder
Cz07g33020.t1	No alias	PAS domain [Interproscan].	0.01	OrthoFinder
Cz12g28200.t1	No alias	PAS domain [Interproscan].	0.03	OrthoFinder
Cz15g11170.t1	No alias	PAS domain [Interproscan].	0.01	OrthoFinder
Cz15g11180.t1	No alias	Hypothetical protein	0.01	OrthoFinder
Cz15g11190.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz18g03020.t1	No alias	PAS domain [Interproscan].	0.04	OrthoFinder
Dusal.0012s00037.1	33201991	PAS domain [Interproscan].	0.02	OrthoFinder
Dusal.0729s00003.1	33203053	PAS domain [Interproscan].	0.04	OrthoFinder
Dusal.1094s00001.1	33191764	Hypothetical protein	0.01	OrthoFinder
UNPLg00189.t1	No alias	PAS domain [Interproscan].	0.02	OrthoFinder
Vocar.0003s0436.1	32889288	PAS domain [Interproscan].	0.01	OrthoFinder
Vocar.0003s0445.1	32888873	PAS domain; PAS fold [Interproscan].	0.02	OrthoFinder
Vocar.0004s0312.1	32889633	PAS fold [Interproscan].	0.02	OrthoFinder
Vocar.0005s0217.1	32883525	PAS domain [Interproscan].	0.02	OrthoFinder
Vocar.0005s0255.1	32883849	PAS domain [Interproscan].	0.02	OrthoFinder
Vocar.0012s0063.1	32895032	PAS domain [Interproscan].	0.02	OrthoFinder
Vocar.0012s0199.1	32895061	PAS fold [Interproscan].	0.01	OrthoFinder
Vocar.0021s0101.1	32895906	PAS domain [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01003353.1_cds_GFH27111.1_21588	HaLaN_25377, GFH27111	PAS fold [Interproscan].	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0006952	defense response	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
BP	GO:0009117	nucleotide metabolic process	IEP	Enrichment
BP	GO:0009165	nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Enrichment
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0019637	organophosphate metabolic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Enrichment
BP	GO:0090407	organophosphate biosynthetic process	IEP	Enrichment
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013767	PAS_fold	640	728

External Links

No external refs found!

lcl|BLLF01000513.1_cds_GFH12539.1_7016 (HaLaN_08248, GFH12539)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation